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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1157797_1157901_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1157797 - 1157901

Intron Length:

105

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGCAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAG

U12 Branch Point Sequence:

GTCAGCTTCACT

Flanking Amino Acid:

LALINRKYDEVLHMVRNAKL

Intron Amino Acid Position:

782

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

74.7

Major BPS

57.3

0.18

1.7

57.1

49.4

Major PPT

92.5

0.96

0.6

88.1

21.6

Minor 5ss

-2.6

3.3

37.6

47.1

Minor BPS

48.5

-0

2.2

69.13

47.3

Associated Gene:

Gene:

COPA

Ensembl Gene ID:

ENSAPLG00000013799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014509

1142791 - 1163663

20873