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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1158049_1158340_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1158049 - 1158340
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ACTGCATCAATT
Flanking Amino Acid:
SLALECGNIEIALEAAKALD
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
70.6
0.46
1
70.5
40.6
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
49.1
0.01
1.9
67.66
43.4

Associated Gene:

Gene:
COPA
Ensembl Gene ID:
ENSAPLG00000013799
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014509
1142791 - 1163663
20873