About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1158740_1159101_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1158740 - 1159101
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TACTTAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTATACTTAATT
Flanking Amino Acid:
RVRILKNCGQKSLAYLTAAT
Intron Amino Acid Position:
926

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.2
0.63
0.9
74.8
38.6
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
78.2
0.96
1.4
90.18
33.4

Associated Gene:

Gene:
COPA
Ensembl Gene ID:
ENSAPLG00000013799
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014509
1142791 - 1163663
20873