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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1159548_1159840_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1159548 - 1159840
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
AGTAAATGAATA
Flanking Amino Acid:
GFFEGTIASKGKGGALAADI
Intron Amino Acid Position:
997

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68
42.6
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
86
0.81
0.7
85.1
29.7
Minor 5ss
42.8
-0.8
3.4
65
46.3
Minor BPS
44.7
-0.4
1.8
55.25
36.5

Associated Gene:

Gene:
COPA
Ensembl Gene ID:
ENSAPLG00000013799
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014509
1142791 - 1163663
20873