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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1161032_1161599_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1161032 - 1161599

Intron Length:

568

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCAAC

5'SS Class:

strong_major

3'SS Sequence:

TCTCTGCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTGTAT

U12 Branch Point Sequence:

GTATCCCCATCC

Flanking Amino Acid:

PTMYGYPHRNWKEAGLKNAL

Intron Amino Acid Position:

1158

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

74.1

36.5

Major BPS

59.2

0.23

1.4

61.1

45.5

Major PPT

74.3

0.55

0.8

65.5

36.1

Minor 5ss

39.8

-1.1

2.9

48.9

41.6

Minor BPS

46.5

-0.2

2.1

61.7

42.8

Associated Gene:

Gene:

COPA

Ensembl Gene ID:

ENSAPLG00000013799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014509

1142791 - 1163663

20873