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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1161787_1161873_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1161787 - 1161873

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCTCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACTCAA

U12 Branch Point Sequence:

AAATGCTTGACT

Flanking Amino Acid:

VVDNKQEIAEAQQLIAICRE

Intron Amino Acid Position:

1221

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

67.9

37.4

Major BPS

60.2

0.25

1.2

63.6

35.5

Major PPT

72.9

0.52

74.3

28.3

Minor 5ss

24.1

-3

3.3

42.8

Minor BPS

61.8

0.45

1.8

75.26

41.2

Associated Gene:

Gene:

COPA

Ensembl Gene ID:

ENSAPLG00000013799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014509

1142791 - 1163663

20873