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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1161985_1162204_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1161985 - 1162204
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
GTCCCCGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GTATCCTCACTT
Flanking Amino Acid:
TLEHQKRVCEMAAYFTHSNL
Intron Amino Acid Position:
1258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
76.8
0.67
1
66
40.9
Major PPT
69.1
0.43
0.9
61.5
34.9
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
56
0.27
1.8
74.07
42.7

Associated Gene:

Gene:
COPA
Ensembl Gene ID:
ENSAPLG00000013799
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014509
1142791 - 1163663
20873