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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1162367_1162466_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1162367 - 1162466

Intron Length:

100

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TTGCTTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGTTGAT

U12 Branch Point Sequence:

CTAGCTGTACCT

Flanking Amino Acid:

LGPKPEVAQQTRKILSACEK

Intron Amino Acid Position:

1312

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

74.4

41.9

Major BPS

63.5

0.33

1.4

57.1

49.4

Major PPT

88.4

0.86

0.7

84.2

30.7

Minor 5ss

43.9

-0.7

2.8

58.1

46.5

Minor BPS

44.5

-0.3

2.3

63.57

47.1

Associated Gene:

Gene:

COPA

Ensembl Gene ID:

ENSAPLG00000013799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014509

1142791 - 1163663

20873