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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1162662_1162970_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1162662 - 1162970

Intron Length:

309

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGGGAG

5'SS Class:

major

3'SS Sequence:

TTTTATTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTCTTTTGAACG

Flanking Amino Acid:

FQGQICRVTTVTEIGKDVIG

Intron Amino Acid Position:

1377

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.1

0.45

1.1

41.2

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

86.4

0.82

0.7

85.2

29.2

Minor 5ss

30.8

-2.2

3.6

42.9

45.3

Minor BPS

63.4

0.28

1.5

67.31

40.8

Associated Gene:

Gene:

COPA

Ensembl Gene ID:

ENSAPLG00000013799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014509

1142791 - 1163663

20873