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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1164487_1164738_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1164487 - 1164738
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATCTCTTTGATT
Flanking Amino Acid:
MNTELASFTKNQRDPAVLDR
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
85.6
0.8
0.8
80.8
36.6
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
72.1
0.78
1.1
80.61
35.6

Associated Gene:

Gene:
S100A11
Ensembl Gene ID:
ENSAPLG00000013523
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014079
1164334 - 1165005
672