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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1164889_1165002_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1164889 - 1165002
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAGGAGGG
5'SS Class:
major
3'SS Sequence:
TCCATTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAA
U12 Branch Point Sequence:
CCAGCCTGAACT
Flanking Amino Acid:
MSKVSPTETER
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
59.2
42.3
Major BPS
51.8
0.05
1.2
45.3
39.8
Major PPT
79
0.65
0.8
73.1
31.7
Minor 5ss
18.3
-3.7
4
25.6
39.3
Minor BPS
58.6
0.35
1.7
69.42
47

Associated Gene:

Gene:
S100A11
Ensembl Gene ID:
ENSAPLG00000013523
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014079
1164334 - 1165005
672