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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1202150_1203147_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1202150 - 1203147
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ATGTCCTGATCT
Flanking Amino Acid:
SPSLTCVGELLCQHPRRMSY
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
82.3
0.73
0.8
73.6
37
Minor 5ss
40.3
-1.1
3.1
56.2
42.2
Minor BPS
62.5
0.47
1.8
79.53
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019550
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023628
1201783 - 1204142
2360