Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1206943_1208102_F

Intron Information:

Intron Rank:

139011

Intron Class:

major

Intron Phase:

Intron Coordinates:

1206943 - 1208102

Intron Length:

1160

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

CTCAATTTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.8

74.9

35.3

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

88.9

0.88

0.7

81.2

36.5

Minor 5ss

-2.3

2.7

36.3

40.6

Minor BPS

60.2

0.4

1.6

73.22

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041746

1206512 - 1208150

1639