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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1208318_1208403_F

Intron Information:

Intron Rank:
139010
Intron Class:
major
Intron Phase:
Intron Coordinates:
1208318 - 1208403
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
GAATTTGCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.89
1
80
30.9
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
22
-3.2
3.9
32.5
42.3
Minor BPS
44.3
-0.4
2.1
53.94
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024829
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040527
1208103 - 1209740
1638