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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1224487_1225256_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1224487 - 1225256
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCT|GCCAGGAAC
5'SS Class:
weak_major
3'SS Sequence:
TGTTCCACAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAA
U12 Branch Point Sequence:
TGTTCCACAGCA
Flanking Amino Acid:
CYQQQCFPPLSVCDQVCPAA
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.9
0.07
1.5
60.7
41.2
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
69.6
0.44
1
64.6
36.4
Minor 5ss
20.6
-3.4
3.8
35.7
40.8
Minor BPS
49.7
-0
2.1
70.12
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025572
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033365
1224450 - 1225663
1214