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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1247691_1248640_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
1247691 - 1248640
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTACTGGGCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTGGCCTTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
71.6
40.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
59.9
0.22
1.2
53.5
45.7
Minor 5ss
34.1
-1.8
2.8
34.5
41
Minor BPS
75.6
0.88
1.4
83.45
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029785
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034864
1245811 - 1249909
4099