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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1296213_1297342_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1296213 - 1297342
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAA
U12 Branch Point Sequence:
TCAGTCTCAAGT
Flanking Amino Acid:
FSLPALCCGGICLHSQKMSF
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
68
0.45
1.2
71.6
36.4
Major PPT
79.7
0.67
1
76.9
42.1
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
47.8
-0
1.9
64.08
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020359
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040104
1294935 - 1297717
2783
ENSAPLT00000032211
1295530 - 1297749
2220