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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1322925_1324079_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1322925 - 1324079
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TTTTCCTGTACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
64.7
0.37
1
73
31.5
Major PPT
79
0.65
0.9
75.9
38
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
73.4
0.82
1.8
93.48
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025042
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025109
1301417 - 1324162
22746