About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1336053_1337165_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1336053 - 1337165
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TTTGCTGTATTT
Flanking Amino Acid:
FSCLIRSGEQTSLCPAVMSS
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
69.1
0.48
1
70
32.1
Major PPT
77.2
0.61
0.9
73.7
40.6
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
48.3
-0
2.3
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024069
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046143
1334497 - 1337397
2901