About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1341160_1341389_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1341160 - 1341389
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTTCTGATCC
Flanking Amino Acid:
MKQTCLHPADMSC
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80
0.68
0.9
77
35.9
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
58
0.23
1.7
70.59
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029332
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034394
1339769 - 1341398
1630