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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1484781_1485581_F

Intron Information:

Intron Rank:
128306
Intron Class:
major
Intron Phase:
Intron Coordinates:
1484781 - 1485581
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAA
U12 Branch Point Sequence:
AGGCAGTGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
51.9
0.05
1.2
44.7
38.6
Major PPT
90.5
0.91
0.6
88.7
20.5
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
37.2
-0.8
2.3
50.7
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019103
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035567
1484687 - 1486480
1794
ENSAPLT00000024683
1484687 - 1486480
1794