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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1558533_1558988_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1558533 - 1558988
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAG
U12 Branch Point Sequence:
GTCTCCTTTCCT
Flanking Amino Acid:
LIQQEFAPVKRSATSKYHYI
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
55.1
0.13
1.5
54.7
43.1
Major PPT
80.8
0.69
0.7
72.7
32.1
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
45.3
-0.2
3.6
76.86
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024302
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038961
1558428 - 1559123
696