Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1569196_1569536_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1569196 - 1569536

Intron Length:

341

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTGAGTGCC

5'SS Class:

major

3'SS Sequence:

TCCCCCATTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

GGCACACTAACA

Flanking Amino Acid:

EQAPTFLAACNRNRPGYLQE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

1.1

62.4

37.7

Major BPS

64.5

0.36

65.2

28.2

Major PPT

75.9

0.58

0.8

69.3

29.6

Minor 5ss

30.5

-2.2

3.1

36.8

40.4

Minor BPS

46.3

-0.2

56.24

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023535

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036719

1568890 - 1570432

1543