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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1573293_1573409_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1573293 - 1573409
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTCCTCTAATA
Flanking Amino Acid:
SEQAIPRPTTRKMKTDLELA
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.6
38.9
Major BPS
80
0.75
1
78.6
31
Major PPT
86.1
0.81
0.6
85.4
21.9
Minor 5ss
31.1
-2.2
2.7
37.6
40
Minor BPS
58.5
0.26
1.7
69.19
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024260
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028804
1572489 - 1577926
5438