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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1576331_1576917_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
1576331 - 1576917
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CCCGTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GCTCACTGAGCT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
76.5
39.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
67.8
0.4
0.8
60.3
29.7
Minor 5ss
39.3
-1.2
3
54.6
42.6
Minor BPS
46.9
-0.1
1.9
64.75
44.7

Associated Gene:

Gene:
S100A4
Ensembl Gene ID:
ENSAPLG00000010031
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022247
1575577 - 1578627
3051
Gene:
Ensembl Gene ID:
ENSAPLG00000024260
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028804
1572489 - 1577926
5438