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Intron Name: Anas_platyrhynchos_platyrhynchos_26_1578194_1578532_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

1578194 - 1578532

Intron Length:

339

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TCGGTGCCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

CCGTCCTCACCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

76.6

34.9

Major BPS

72.4

0.56

73.5

32.5

Major PPT

68.8

0.42

58.2

43.1

Minor 5ss

36.6

-1.5

2.9

46.4

44.2

Minor BPS

49.4

-0

1.9

57.89

Associated Gene:

Gene:

S100A4

Ensembl Gene ID:

ENSAPLG00000010031

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022247

1575577 - 1578627

3051