Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1588131_1588238_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1588131 - 1588238

Intron Length:

108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTACTCGAG

5'SS Class:

weak_major

3'SS Sequence:

TGAGGCTGGGCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCTCAA

U12 Branch Point Sequence:

GTGAGCTCAACC

Flanking Amino Acid:

AIQVLVNNFDNAGTRGGQLL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.9

0.19

1.1

49.9

41.2

Major BPS

61.8

0.29

1.1

63.4

35.6

Major PPT

51.9

0.04

1.2

46.5

45.6

Minor 5ss

36.4

-1.5

3.5

45.9

Minor BPS

48.4

-0.1

60.35

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030555

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044611

1585634 - 1588297

2664