Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1588802_1593191_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1588802 - 1593191

Intron Length:

4390

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAGAGGGC

5'SS Class:

weak_major

3'SS Sequence:

GGTGCAGAACAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCAGAA

U12 Branch Point Sequence:

GGGTGCAGAACA

Flanking Amino Acid:

MGDAAKGCRRKLGRPVRRQG

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.4

0.2

1.1

53.7

37.5

Major BPS

49.9

-0

1.1

46.7

38.9

Major PPT

44.6

-0.3

1.2

39.7

Minor 5ss

29.2

-2.4

3.8

39.5

44.7

Minor BPS

44.4

-0.4

2.1

55.13

Associated Gene:

Gene:

S100A14

Ensembl Gene ID:

ENSAPLG00000010004

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010413

1588741 - 1594886

6146