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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_15888_16066_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15888 - 16066
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCCTC
5'SS Class:
major
3'SS Sequence:
CCCCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCCCTCTCCATC
Flanking Amino Acid:
ESVSLTLHLEGVVFPYQPSN
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
63.1
43.4
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
69.6
0.44
0.8
60.5
29.4
Minor 5ss
36.5
-1.5
3.2
42.7
44.4
Minor BPS
44.1
-0.4
1.9
50.84
40.8

Associated Gene:

Gene:
HAPLN2
Ensembl Gene ID:
ENSAPLG00000016119
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016809
15083 - 16796
1714