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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1603815_1605302_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1603815 - 1605302
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGAAG
5'SS Class:
major
3'SS Sequence:
TTCGACCTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTTATTTAAAC
Flanking Amino Acid:
KSTTKMSLNERFTNMLKNKQ
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
66
41.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
65.3
0.34
1.1
64.3
36.7
Minor 5ss
26.6
-2.7
3
31.4
42.6
Minor BPS
63.3
0.4
1.6
72.42
38.5

Associated Gene:

Gene:
CHTOP
Ensembl Gene ID:
ENSAPLG00000009925
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010339
1603750 - 1610246
6497