Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1605457_1608396_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1605457 - 1608396

Intron Length:

2940

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTCATTCCAGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

TGTTCCTTCAAA

Flanking Amino Acid:

SVQAALKLKQSLKQRLGKSN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.5

26.8

Major BPS

87.6

0.93

0.9

89.3

Major PPT

63.2

0.3

1.1

65.5

Minor 5ss

24.3

-3

3.1

28.7

43.6

Minor BPS

65.4

0.48

1.9

77.66

38.8

Associated Gene:

Gene:

CHTOP

Ensembl Gene ID:

ENSAPLG00000009925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010339

1603750 - 1610246

6497