About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_163771_163907_R


Intron Information:

Intron Rank:
20

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
163771 - 163907

Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCA|GTGCGTACC

5'SS Class:
major

3'SS Sequence:
CCCTTCCCTCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GCGTGAC

U12 Branch Point Sequence:
CCTCCCTTCCCT

Flanking Amino Acid:
LLEIEDLPVSQFKNVIFDIV

Intron Amino Acid Position:
950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
63.1
0.31
1.1
60.1
39

Major BPS
46.4
-0.2
1.4
36.7
42.3

Major PPT
78.2
0.63
0.7
69.1
31.5

Minor 5ss
32.7
-2
2.9
43.1
37.8

Minor BPS
41.5
-0.5
3.6
68.68
48

Associated Gene:

Gene:
IQGAP3

Ensembl Gene ID:

Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

163430 - 170180
6751