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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_164010_164153_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
164010 - 164153
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
GTGGCTGGAGCT
Flanking Amino Acid:
TCLDNLAASNRASGKSKKLQ
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
77.7
32.4
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
85.5
0.8
0.7
77
31.7
Minor 5ss
29.7
-2.3
3.4
40
46.1
Minor BPS
40
-0.6
2.2
57
45.7

Associated Gene:

Gene:
IQGAP3
Ensembl Gene ID:
ENSAPLG00000007690
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008028
163430 - 170180
6751