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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1738070_1738298_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1738070 - 1738298
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TTCCCGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
CGGGGCTGAGCG
Flanking Amino Acid:
PAAAARTPPCPWPRTCCTRP
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
57.1
42.2
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
71.7
0.49
0.8
65.3
30.5
Minor 5ss
29.4
-2.4
3.1
37.2
40.3
Minor BPS
38.1
-1
2
36.44
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021084
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023722
1737202 - 1738728
1527