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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1740603_1745381_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1740603 - 1745381
Intron Length:
4779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
CTGTCCCCAAAG
Flanking Amino Acid:
GVEKVLEKLEVQPSCPALTV
Intron Amino Acid Position:
1453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
77.8
32.3
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
64
0.32
1
63.7
31.9
Minor 5ss
30.9
-2.2
3.3
40
46.1
Minor BPS
46.2
-0.4
2
53.78
46.5

Associated Gene:

Gene:
NUP210L
Ensembl Gene ID:
ENSAPLG00000014606
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015245
1738560 - 1766515
27956