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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1741615_1741666_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1741615 - 1741666
Intron Length:
52

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGCTAA
5'SS Class:
major
3'SS Sequence:
GTGCAGCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
TTCTTCTTCAGT
Flanking Amino Acid:
ISLDYYTARLWILLNFLLEN
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
59.9
37.3
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
63.3
0.3
1
58
42.8
Minor 5ss
36.5
-1.5
3.3
42.5
46.9
Minor BPS
57.3
0.31
2.1
78.66
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017253
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027641
1740815 - 1746356
5542