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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1745898_1746283_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1745898 - 1746283
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
GCTGACCGACTT
Flanking Amino Acid:
TTSSGRETLRGPCSPTQLSA
Intron Amino Acid Position:
1319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.9
36.4
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
78.7
0.65
0.7
77.7
24.2
Minor 5ss
32.9
-2
3.2
43.7
43.7
Minor BPS
37.2
-0.8
2
51.02
43.1

Associated Gene:

Gene:
NUP210L
Ensembl Gene ID:
ENSAPLG00000014606
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015245
1738560 - 1766515
27956