About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1749645_1750369_R

Intron Information:

Intron Rank:
24
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1749645 - 1750369
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACAAA
5'SS Class:
major
3'SS Sequence:
GTTCTTGGCTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCCTTTTTCACT
Flanking Amino Acid:
TNSQLKLYTNREGAAFVNFQ
Intron Amino Acid Position:
1040

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
67.5
39.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
59
0.2
1.2
63.4
42.1
Minor 5ss
36.7
-1.5
3.2
47.6
48.1
Minor BPS
59.2
0.37
1.8
74.22
43.6

Associated Gene:

Gene:
NUP210L
Ensembl Gene ID:
ENSAPLG00000014606
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015245
1738560 - 1766515
27956