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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1761666_1762485_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1761666 - 1762485
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGCTG
5'SS Class:
major
3'SS Sequence:
TCTATTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
TEVLYRYNLQVEGGSGNFSW
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
62.8
43.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
74.6
0.55
1
72.3
37.8
Minor 5ss
28.3
-2.5
3.4
37.6
47.1
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
NUP210L
Ensembl Gene ID:
ENSAPLG00000014606
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015245
1738560 - 1766515
27956