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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1763634_1764064_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1763634 - 1764064
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TGTCACTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TTTTTGTCACTT
Flanking Amino Acid:
RDSTKVYLSDNLRIIHHFSK
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.5
37
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
79.8
0.67
0.9
72.5
37.4
Minor 5ss
33
-1.9
2.7
39.5
38.8
Minor BPS
47
-0.1
2.4
75.15
42.4

Associated Gene:

Gene:
NUP210L
Ensembl Gene ID:
ENSAPLG00000014606
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015245
1738560 - 1766515
27956