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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1773039_1777034_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1773039 - 1777034
Intron Length:
3996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTG
5'SS Class:
major
3'SS Sequence:
TGCTTCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
AACTCTTTAACT
Flanking Amino Acid:
GHLPWFPQPQIN*
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
70
40.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
72.3
0.5
1
65.6
41
Minor 5ss
38.7
-1.3
3
49.5
46.8
Minor BPS
78.3
0.97
1.1
83.43
37.5

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036787
1772739 - 1784284
11546