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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1773754_1774722_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1773754 - 1774722
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATTTGA
5'SS Class:
major
3'SS Sequence:
CGTCTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAGAA
U12 Branch Point Sequence:
TGTGCCTAAAGG
Flanking Amino Acid:
LIFRGTCYGDSLSIQCPGAW
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.2
69
38.2
Major BPS
54.8
0.12
1.2
52.7
43.2
Major PPT
82
0.72
0.8
75.9
32.8
Minor 5ss
36
-1.6
2.6
42.7
43.9
Minor BPS
49.1
-0.2
2.1
59.57
47.9

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043039
1772739 - 1789996
17258