Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1773754_1778924_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1773754 - 1778924

Intron Length:

5171

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAATATG

5'SS Class:

major

3'SS Sequence:

CGTCTTTCTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGAGAA

U12 Branch Point Sequence:

TGTGCCTAAAGG

Flanking Amino Acid:

LDHALNDMTSILSIQCPGAW

Intron Amino Acid Position:

284

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

77.1

37.7

Major BPS

54.8

0.12

1.2

52.7

43.2

Major PPT

0.72

0.8

75.9

32.8

Minor 5ss

41.1

-1

55.5

42.1

Minor BPS

49.1

-0.2

2.1

59.57

47.9

Associated Gene:

Gene:

TPM3

Ensembl Gene ID:

ENSAPLG00000015228

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015879

1773634 - 1789996

16363