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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1774779_1777034_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1774779 - 1777034
Intron Length:
2256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTG
5'SS Class:
major
3'SS Sequence:
TTGTTCTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAA
U12 Branch Point Sequence:
GTTAGAGTAACA
Flanking Amino Acid:
GHLPWFPQPQLHLCNSLDLI
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
70
40.5
Major BPS
51.9
0.05
0.9
59
27.3
Major PPT
83.9
0.76
0.8
77
37.2
Minor 5ss
38.7
-1.3
3
49.5
46.8
Minor BPS
43.3
-0.5
2.5
62.15
43.5

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043039
1772739 - 1789996
17258