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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1777105_1778924_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1777105 - 1778924
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAATATG
5'SS Class:
major
3'SS Sequence:
TCGTCTGCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCGAT
U12 Branch Point Sequence:
TCGTCTGCCACA
Flanking Amino Acid:
LDHALNDMTSIARRALQESS
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
77.1
37.7
Major BPS
50.9
0.02
1.4
52.1
45.2
Major PPT
70.5
0.46
0.9
64.3
36.7
Minor 5ss
41.1
-1
3
55.5
42.1
Minor BPS
41.3
-0.6
2.4
54.46
44.9

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048449
1772739 - 1789996
17258
ENSAPLT00000048120
1772739 - 1784284
11546
ENSAPLT00000043039
1772739 - 1789996
17258
ENSAPLT00000036787
1772739 - 1784284
11546