About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1779004_1780715_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1779004 - 1780715
Intron Length:
1712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AAACCTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TCCTCCTAAACC
Flanking Amino Acid:
KLEKTIDDLEDELYAQKLKY
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
35.1
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
65.4
0.35
0.9
55.5
40.1
Minor 5ss
34.3
-1.8
3.4
50.5
46
Minor BPS
68.4
0.56
1.7
73.91
43.5

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026763
1777433 - 1789996
12564
ENSAPLT00000048449
1772739 - 1789996
17258
ENSAPLT00000017434
1777433 - 1789996
12564
ENSAPLT00000048120
1772739 - 1784284
11546
ENSAPLT00000015879
1773634 - 1789996
16363
ENSAPLT00000043039
1772739 - 1789996
17258
ENSAPLT00000036787
1772739 - 1784284
11546