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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1780167_1780715_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1780167 - 1780715
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCCGAG
U12 Branch Point Sequence:
CCTGCTTTCACA
Flanking Amino Acid:
KLEKTIDDLEELQEQSRGLL
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
35.1
Major BPS
34.9
-0.9
1.5
23.6
36.8
Major PPT
77.1
0.61
0.8
71
33.3
Minor 5ss
34.3
-1.8
3.4
50.5
46
Minor BPS
52
0.06
1.9
61.93
45.1

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036300
1779569 - 1789996
10428