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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1780786_1780902_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1780786 - 1780902
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGCTGCTGACCA
Flanking Amino Acid:
IKILTDKLKEAETRAEFAER
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
72.3
0.5
1
68.5
37.3
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
46.8
-0.2
2.1
60.68
45.1

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026763
1777433 - 1789996
12564
ENSAPLT00000048120
1772739 - 1784284
11546
ENSAPLT00000017434
1777433 - 1789996
12564
ENSAPLT00000043039
1772739 - 1789996
17258
ENSAPLT00000015879
1773634 - 1789996
16363
ENSAPLT00000036787
1772739 - 1784284
11546
ENSAPLT00000036300
1779569 - 1789996
10428
ENSAPLT00000048449
1772739 - 1789996
17258