About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1780966_1781980_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1780966 - 1781980
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTAACC
5'SS Class:
major
3'SS Sequence:
TCCTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGACAC
U12 Branch Point Sequence:
TCCTTTTCCACA
Flanking Amino Acid:
LKCLSVAEEKYSQKEDKYEE
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.5
38.6
Major BPS
48.1
-0.1
1.2
56.1
39.6
Major PPT
83.5
0.75
0.7
79.2
26.5
Minor 5ss
33.7
-1.9
3.1
45.1
42.5
Minor BPS
46.9
-0.2
1.9
58
42.5

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017434
1777433 - 1789996
12564