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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_1781499_1782833_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1781499 - 1782833
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
CAAAACCCCACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TCTTTCTTTACA
Flanking Amino Acid:
RTEERAELAESKCSELEEEL
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
75.8
35.2
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
56.4
0.15
1
46.8
35.7
Minor 5ss
33.5
-1.9
2.8
42.9
38.5
Minor BPS
71
0.65
1.6
78.67
37.8

Associated Gene:

Gene:
TPM3
Ensembl Gene ID:
ENSAPLG00000015228
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036787
1772739 - 1784284
11546
ENSAPLT00000036300
1779569 - 1789996
10428
ENSAPLT00000048449
1772739 - 1789996
17258
ENSAPLT00000026763
1777433 - 1789996
12564
ENSAPLT00000048120
1772739 - 1784284
11546
ENSAPLT00000015879
1773634 - 1789996
16363
ENSAPLT00000043039
1772739 - 1789996
17258